You speak, we listen and deliver.

Mass Dynamics listens to the needs and delivers based on the needs of the community. New features are deployed regularly and can be accessed immediately. No annoying update installations or extra payments.



November 16th - Product Characterisation: A variety of Peptide Mapping enhancements including:

  • Expanding and collapsing Identification items that have long sequences so you can view the full sequence string
  • Annotated sequences so you can easily see the position where a modification occurred on a peptide
  • Provide shortcuts to go directly to a Groups Quantitation visualisation so you can navigate faster and easier
  • Allow select all for Identifications when creating a Group so you can perform your work faster and easier
  • Improved spacing so you can have more screen space for PSM Screening and Quantitation Analysis
  • Introduce Retention Time comparisons in PSM Screening
  • Further internal benchmarking against public datasets so you can continue to have confidence in the results
  • Fixed a bug so the link to a peptide mapping study no longer shows an error


October 21st - Product Characterisation: a new dataset has been added to our automated benchmarking suite to ensure the standardised quality of the Peptide Mapping workflow and service

October 14th - Product Characterisation: a variety of PSM screening enhancements to improve the overall Peptide Mapping service experience

October 2nd - MD 1.0: Improvement on generic format validation so you still process an experiment successfully even if you accidentally get your number/string format incorrect


September 16th - Product Characterization: Peptide Mapping experiments using Demo Data "Probing the Sensitivity of the Lumos Mass Spectrometer using a Standard Reference Protein in a Complex Background"

September 11th - MD 1.0 'Papers from Journals' experiment added. "Discovery and Validation of Novel Protein Biomarkers in Ovarian Cancer Patient Urine"

September 4th - MD 1.0 'Papers from Journals' experiment added. "Deep muscle-proteomic analysis of freeze-dried human muscle biopsies"

September 4th - MD 1.0: Surfaced workflow parameters for Generic Format and MaxQuant experiments so you can see how the workflow processed your data.


August 20th - MD 1.0 'Papers from Journals' experiment added. "Spatiotemporal profiling of cytosolic signaling complexes in living cells by selective proximity proteomics"

August 20th - MD 1.0: Table in Enrichment Tab is now ordered by PValue so you can see the smallest PValues first.

August 11th - MD 1.0: Added the total number of quantified proteins shown when viewing volcano plot so you can navigate your data better.

August 5th - MD 1.0  'Papers from Journals' experiment added. "Label-free proteomic analysis of serum exosomes from paroxysmal atrial fibrillation patients"

JULY 2021

July 19th - MD+ Enterprise: Member can update Project Library meaning more control for the team

July 19th - MD+ Enterprise: Deamidation Substitution means deamidation handling can be turned on or off for greater control

July 19th - MD+ Enterprise: Trends Plot improvements means better visuals and easier interpretation

July 19th - MD+ Enterprise: Client JMP Download for Cross Studies means better and faster offline analysis of studies

July 16th - MD 1.0: Data uploaded to Mass Dynamics using a generic format means you can use Mass Dynamics - no matter what software you use to pre-process raw Proteomics Mass Spectrometry data.

July 3rd - MD 1.0 'Papers from Journals' experiment added. "TMT Demo: PXD019880: Isobaric matching between runs and novel PSM-level normalization in MaxQuant strongly improve reporter ion-based quantification"

JUNE 2021

June 22nd - MD 1.0: In Enrichment, new columns and content for the size of the pathways and the number of proteins in the pathway that we observed means quicker insights

June 20th - MD 1.0: Identify significantly enriched or over-represented gene sets using Enrichment Analysis via GO and Reactome Databases means quicker and non-biased discovery. See #MassGeek Mastery Enrichment video here.

June 10th - MD 1.0: Table in the enrichment tab now ordered by P-Value, showing the smallest P-Values first means easier reviewing of data in the table

June 3rd - MD 1.0 Longer session times before being logged out means faster access to your experiments.

APRIL 2021

April 23rd - MD 1.0: Improvements to Volcano Plot means easier navigation and usage

April 12th - MD+ Enterprise: Creation of custom sample variables means better and faster understanding of data trends

April 3rd - MD 1.0: Quality Control report now downloadable means better and easier offline usage with your QC Report. See #MassGeek Mastery QC Report video here

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